Community Resources
Recommendations for people in the genomic epidemiology field to read, watch, use, and follow.
Featured Resource
Great reading for anyone interested in genomic epidemiology
Applied Genomic Epidemiology Handbook
A comprehensive, open-access handbook covering fundamental concepts and practical applications in genomic epidemiology.
Read the HandbookOrganizations
- US Centers for Disease Control and Prevention Office of Advanced Molecular Detection
- Association of Public Health Laboratories
- Council of State and Territorial Epidemiologists
- American Society for Microbiology
- European Society of Clinical Microbiology and Infectious Diseases (ESCMID)
- Public Health Alliance for Genomic Epidemiology
Pathogen-Specific Networks
- MalariaGEN (Genomic Epidemiology Network)
- PlasmoGenEpi (Plasmodium Genetic Epidemiology)
- KlebNET (Global genomic surveillance platform for Klebsiella pneumoniae)
- PulseNet International (Foodborne disease surveillance - Salmonella, E. coli, Listeria, Shigella)
- Global Influenza Surveillance and Response System (GISRS)
Global & Regional Genomic Surveillance Initiatives
Major national and international programs for pathogen genomics and pandemic preparedness
WHO Programs
WHO Regional Networks
National & Continental
Coordination & Collaboration
These programs work together to build global capacity for pathogen genomic surveillance, share data and best practices, and strengthen pandemic preparedness across all regions.
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